MolPath ConsultingMolecular pathology · Vienna

Research & Practice

Validating an NGS oncology panel

Start with the intended use, then make the validation evidence match the claims.

All articles

Define the intended use first

Before planning experiments, define the specimen types, target regions, variant classes and reporting boundaries. A validation for small sequence variants does not automatically establish performance for copy-number changes or RNA fusions.

Make the claims explicit

Separate accuracy, repeatability, reproducibility and analytical sensitivity. Decide which reference materials and clinical specimens can address each question, and document acceptance criteria before reviewing the results.

Include the complete workflow

Extraction, library preparation, sequencing, bioinformatics and reporting all contribute to the result. Changes to the workflow should trigger a review of which performance claims need renewed verification.

Keep evidence and limitations together

A useful report states what was assessed, under which conditions, what passed and where uncertainty remains. This makes the validation useful for staff introducing the assay and for later quality reviews.

Let’s discuss your project.

Tell me what you are working on and where you need support.

Discuss a consulting project